LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data.

Yoshinori Fukasawa Luca ErminiHai WangKaren CartyMin-Sin Cheung

Published in: G3 (Bethesda, Md.) (2020)

We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio). Key statistics were optimized for long read data, and LongQC covers all major TGS platforms. LongQC processes and visualizes those statistics automatically and quickly.

Keyphrases

quality control
single cell
single molecule
electronic health record
rna seq
big data
machine learning
high throughput
gene expression
dna methylation