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The landscape of GWAS validation; systematic review identifying 309 validated non-coding variants across 130 human diseases.

Ammar J AlsheikhSabrina WollenhauptEmily A KingJonas ReebSujana GhoshLindsay R StolzenburgSaleh TamimJozef LazarJ Wade DavisHoward J Jacob
Published in: BMC medical genomics (2022)
This review of the literature is the first to systematically evaluate the status and the landscape of experimentation being used to validate non-coding GWAS-identified variants. Our results clearly underscore the multifaceted approach needed for experimental validation, have practical implications on variant prioritization and considerations of target gene nomination. While the field has a long way to go to validate the thousands of GWAS associations, we show that progress is being made and provide exemplars of validation studies covering a wide variety of mechanisms, target genes, and disease areas.
Keyphrases
  • systematic review
  • copy number
  • genome wide
  • endothelial cells
  • single cell
  • meta analyses
  • genome wide identification
  • genome wide analysis