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Surveying alignment-free features for Ortholog detection in related yeast proteomes by using supervised big data classifiers.

Deborah GalpertAlberto FernándezFrancisco HerreraAgostinho AntunesReinaldo Molina-RuizGuillermin Agüero-Chapin
Published in: BMC bioinformatics (2018)
The incorporation of alignment-free features in supervised big data models did not significantly improve ortholog detection in yeast proteomes regarding the classification qualities achieved with just alignment-based similarity measures. However, the similarity of their classification performance to that of traditional ortholog detection methods encourages the evaluation of other alignment-free protein pair descriptors in future research.
Keyphrases
  • big data
  • machine learning
  • artificial intelligence
  • deep learning
  • loop mediated isothermal amplification
  • real time pcr
  • label free
  • saccharomyces cerevisiae
  • current status
  • binding protein
  • quantum dots