Development of an effective predictive screening tool for prostate cancer using the ClarityDX machine learning platform.
M Eric HyndmanRobert J PaproskiAdam KinnairdAdrian FaireyLeonard MarksChristian P PavlovichSean A FletcherRoman ZachovalVanda AdamcovaJiri StejskalArmen AprikianChristopher J D WallisDesmond PinkCatalina VasquezPerrin H BeattyJohn D LewisPublished in: NPJ digital medicine (2024)
The current prostate cancer (PCa) screen test, prostate-specific antigen (PSA), has a high sensitivity for PCa but low specificity for high-risk, clinically significant PCa (csPCa), resulting in overdiagnosis and overtreatment of non-csPCa. Early identification of csPCa while avoiding unnecessary biopsies in men with non-csPCa is challenging. We built an optimized machine learning platform (ClarityDX) and showed its utility in generating models predicting csPCa. Integrating the ClarityDX platform with blood-based biomarkers for clinically significant PCa and clinical biomarker data from a 3448-patient cohort, we developed a test to stratify patients' risk of csPCa; called ClarityDX Prostate. When predicting high risk cancer in the validation cohort, ClarityDX Prostate showed 95% sensitivity, 35% specificity, 54% positive predictive value, and 91% negative predictive value, at a ≥ 25% threshold. Using ClarityDX Prostate at this threshold could avoid up to 35% of unnecessary prostate biopsies. ClarityDX Prostate showed higher accuracy for predicting the risk of csPCa than PSA alone and the tested model-based risk calculators. Using this test as a reflex test in men with elevated PSA levels may help patients and their healthcare providers decide if a prostate biopsy is necessary.
Keyphrases
- prostate cancer
- radical prostatectomy
- machine learning
- end stage renal disease
- healthcare
- high throughput
- newly diagnosed
- chronic kidney disease
- ejection fraction
- benign prostatic hyperplasia
- prognostic factors
- ultrasound guided
- artificial intelligence
- big data
- squamous cell carcinoma
- young adults
- middle aged
- social media
- data analysis
- fine needle aspiration
- breast cancer risk