Direct androgen receptor regulation of sexually dimorphic gene expression in the mammalian kidney.
Lingyun Ivy XiongJing LiuSeung Yub HanKari KoppitchJin-Jin GuoMegan RommelfangerFan GaoIngileif B HallgrimsdottirLior PachterJunhyong KimAdam L MacLeanAndrew P McMahonPublished in: bioRxiv : the preprint server for biology (2023)
Mammalian organs exhibit distinct physiology, disease susceptibility and injury responses between the sexes. In the mouse kidney, sexually dimorphic gene activity maps predominantly to proximal tubule (PT) segments. Bulk RNA-seq data demonstrated sex differences were established from 4 and 8 weeks after birth under gonadal control. Hormone injection studies and genetic removal of androgen and estrogen receptors demonstrated androgen receptor (AR) mediated regulation of gene activity in PT cells as the regulatory mechanism. Interestingly, caloric restriction feminizes the male kidney. Single-nuclear multiomic analysis identified putative cis-regulatory regions and cooperating factors mediating PT responses to AR activity in the mouse kidney. In the human kidney, a limited set of genes showed conserved sex-linked regulation while analysis of the mouse liver underscored organ-specific differences in the regulation of sexually dimorphic gene expression. These findings raise interesting questions on the evolution, physiological significance, and disease and metabolic linkage, of sexually dimorphic gene activity.
Keyphrases
- gene expression
- genome wide
- rna seq
- dna methylation
- copy number
- transcription factor
- genome wide identification
- endothelial cells
- single cell
- induced apoptosis
- electronic health record
- genome wide analysis
- machine learning
- hiv infected
- deep learning
- pregnant women
- signaling pathway
- oxidative stress
- hepatitis c virus
- preterm birth
- ultrasound guided
- data analysis