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Spatial PD-L1, immune-cell microenvironment, and genomic copy-number alteration patterns and drivers of invasive-disease transition in prospective oral precancer cohort.

William N WilliamJianjun ZhangXin ZhaoEdwin R ParraNaohiro UraokaHeather Y LinS Andrew PengAdel K El-NaggarJaime Rodriguez-CanalesJaejoon SongAnn M GillenwaterIgnacio I WistubaJeffrey N MyersKathryn A GoldRenata FerrarottoPatrick HwuTeresa DavoliJ Jack LeeJohn V HeymachVassiliki A PapadimitrakopoulouScott M Lippman
Published in: Cancer (2023)
This report provides spatial insight into the immune landscape and drivers of OPCs, and a publicly available immunogenomic data set for future precancer interrogation. The data suggest that 9p21.3 LOH triggers an immune-hot inflammatory phenotype; whereas increased 9p deletion size encompassing CD274 at 9p24.1 may contribute to CD3/8 and PD-L1 depletion during invasive transition. The inferior OCFS in PD-L1-high, immune-cold OPCs support the development of T-cell recruitment strategies.
Keyphrases
  • copy number
  • mitochondrial dna
  • electronic health record
  • genome wide
  • big data
  • dna methylation
  • oxidative stress
  • single cell
  • machine learning
  • artificial intelligence
  • data analysis