ASAPA: a bioinformatic pipeline based on Iso-Seq that identifies the links among alternative splicing, alternative transcription initiation and alternative polyadenylation.

Fei WangZhongxin JinShengnan WangLongcheng YangZongbao FanYu-Xin Yao

Published in: Functional & integrative genomics (2024)

Our pipeline enables streamlined analysis for a robust detection of potential links among AS, ATI and APA using Iso-Seq data, which is conducive to a better understanding of transcription landscape generation.

Keyphrases

genome wide
single cell
rna seq
transcription factor
dna methylation
electronic health record
loop mediated isothermal amplification
label free
human health
gene expression
risk assessment
machine learning
climate change
artificial intelligence