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ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing.

Robin JugasHelena Vitkova
Published in: BMC bioinformatics (2024)
The ProcaryaSV pipeline provides an integrative approach to structural variation detection from paired-end next-generation sequencing of bacterial samples. It can be easily installed and used on Linux machines. It is publicly available on GitHub at https://github.com/robinjugas/ProcaryaSV .
Keyphrases
  • loop mediated isothermal amplification
  • label free
  • real time pcr
  • single cell
  • single molecule
  • copy number
  • gene expression
  • dna methylation
  • network analysis
  • quantum dots
  • sensitive detection
  • cell free