ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing.

Published in: BMC bioinformatics (2024)

The ProcaryaSV pipeline provides an integrative approach to structural variation detection from paired-end next-generation sequencing of bacterial samples. It can be easily installed and used on Linux machines. It is publicly available on GitHub at https://github.com/robinjugas/ProcaryaSV .

Keyphrases

loop mediated isothermal amplification
label free
real time pcr
single cell
single molecule
copy number
gene expression
dna methylation
network analysis
quantum dots
sensitive detection
cell free