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Scalable analysis of cell-type composition from single-cell transcriptomics using deep recurrent learning.

Yue DengFeng BaoQionghai DaiLani F WuSteven J Altschuler
Published in: Nature methods (2019)
Recent advances in large-scale single-cell RNA-seq enable fine-grained characterization of phenotypically distinct cellular states in heterogeneous tissues. We present scScope, a scalable deep-learning-based approach that can accurately and rapidly identify cell-type composition from millions of noisy single-cell gene-expression profiles.
Keyphrases
  • single cell
  • rna seq
  • deep learning
  • high throughput
  • air pollution
  • molecular dynamics
  • genome wide
  • machine learning
  • artificial intelligence
  • copy number
  • transcription factor