Increased blood draws for ultrasensitive ctDNA and CTCs detection in early breast cancer patients.
Alfonso Alba-BernalAna Godoy-OrtizMaría Emilia Domínguez-RecioEsperanza López-LópezMaría Elena Quirós-OrtegaVictoria Sánchez-MartínMaría Dunia Roldán-DíazBegoña Jiménez-RodríguezJesús Peralta-LineroEstefanía Bellagarza-GarcíaLaura Troyano-RamosGuadalupe Garrido-RuizM Isabel Hierro-MartínLuis ViciosoÁlvaro González-OrtizNoelia Linares-ValenciaJesús Velasco-SueltoGuillermo CarbajosaAlicia Garrido-ArandaRocío Lavado-ValenzuelaMartina ÁlvarezJavier PascualIñaki Comino-MéndezEmilio AlbaPublished in: NPJ breast cancer (2024)
Early breast cancer patients often experience relapse due to residual disease after treatment. Liquid biopsy is a methodology capable of detecting tumor components in blood, but low concentrations at early stages pose challenges. To detect them, next-generation sequencing has promise but entails complex processes. Exploring larger blood volumes could overcome detection limitations. Herein, a total of 282 high-volume plasma and blood-cell samples were collected for dual ctDNA/CTCs detection using a single droplet-digital PCR assay per patient. ctDNA and/or CTCs were detected in 100% of pre-treatment samples. On the other hand, post-treatment positive samples exhibited a minimum variant allele frequency of 0.003% for ctDNA and minimum cell number of 0.069 CTCs/mL of blood, surpassing previous investigations. Accurate prediction of residual disease before surgery was achieved in patients without a complete pathological response. A model utilizing ctDNA dynamics achieved an area under the ROC curve of 0.92 for predicting response. We detected disease recurrence in blood in the three patients who experienced a relapse, anticipating clinical relapse by 34.61, 9.10, and 7.59 months. This methodology provides an easily implemented alternative for ultrasensitive residual disease detection in early breast cancer patients.
Keyphrases
- circulating tumor cells
- circulating tumor
- label free
- single cell
- real time pcr
- loop mediated isothermal amplification
- gold nanoparticles
- free survival
- stem cells
- ejection fraction
- high throughput
- end stage renal disease
- newly diagnosed
- minimally invasive
- cell therapy
- quantum dots
- machine learning
- acute coronary syndrome
- high resolution
- prognostic factors
- copy number
- big data
- sensitive detection
- atrial fibrillation
- deep learning
- cell free