ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.

Silas KieserJoseph BrownEvgeny M ZdobnovMirko TrajkovskiLee Ann McCue

Published in: BMC bioinformatics (2020)

ATLAS provides a user-friendly, modular and customizable Snakemake workflow for metagenome data processing; it is easily installable with conda and maintained as open-source on GitHub at https://github.com/metagenome-atlas/atlas.

Keyphrases

single cell
electronic health record
rna seq
big data
gene expression
copy number
deep learning