Photochemical and Molecular Dynamics Studies of Halide Binding in Flavoenzyme Glucose Oxidase.
Bo ZhuangMarten H VosAlexey AleksandrovPublished in: Chembiochem : a European journal of chemical biology (2022)
Glucose oxidase (GOX), a characteristic flavoprotein oxidase with widespread industrial applications, binds fluoride (F - ) and chloride (Cl - ). We investigated binding properties of halide inhibitors of GOX through time-resolved spectral characterization of flavin-related photochemical processes and molecular dynamic simulations. Cl - and F - bind differently to the protein active site and have substantial but opposite effects on the population and decay of the flavin excited state. Cl - binds closer to the flavin, whose excited-state decays in <100 fs due to anion-π interactions. Such interactions appear absent in F - binding, which, however, significantly increases the active-site rigidity leading to more homogeneous, picosecond fluorescence decay kinetics. These findings are discussed in relation to the mechanism of halide inhibition of GOX by occupying the accommodation site of catalytic intermediates and increasing the active-site rigidity.
Keyphrases
- molecular dynamics
- density functional theory
- binding protein
- dna binding
- blood glucose
- single molecule
- solar cells
- perovskite solar cells
- optical coherence tomography
- drinking water
- heavy metals
- magnetic resonance imaging
- type diabetes
- amino acid
- magnetic resonance
- transcription factor
- metabolic syndrome
- computed tomography
- blood pressure
- mass spectrometry
- skeletal muscle
- atomic force microscopy
- weight loss
- drug induced