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Direct and Simultaneous Measurement of the Stiffness and Internal Friction of a Single Folded Protein.

Surya Pratap S DeopaShatruhan Singh RajputAadarsh KumarShivprasad Patil
Published in: The journal of physical chemistry letters (2022)
The nanomechanical response of a folded single protein, the natural nanomachine responsible for myriad biological processes, provides insight into its function. The conformational flexibility of a folded state, characterized by its viscoelasticity, allows proteins to adopt different shapes to perform their function. Despite efforts, its direct measurement has not been possible so far. We present a direct and simultaneous measurement of the stiffness and internal friction of the folded domains of the protein titin using a special interferometer based atomic force microscope. We analyzed the data by carefully separating different contributions affecting the response of the experimental probe to obtain the folded state's viscoelasticity. Above ∼95 pN of force, the individual immunoglobulins of titin transition from an elastic solid-like native state to a soft viscoelastic intermediate.
Keyphrases
  • single molecule
  • amino acid
  • atomic force microscopy
  • living cells
  • molecular dynamics
  • molecular dynamics simulations
  • electronic health record
  • big data
  • small molecule
  • artificial intelligence