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Long-Read Genome Sequence Resource of Ascochyta versabilis Causing Leaf Spot Disease in Pseudostellaria heterophylla.

Yunbo KuangZhe WangFelix AbahHongli HuBaohua WangZonghua WangHuiping ZhangZuyun YeJian-Dong Bao
Published in: Molecular plant-microbe interactions : MPMI (2020)
Ascochyta versabilis is the fungal pathogen that causes the severe leaf spot disease of Pseudostellaria heterophylla (Miq.) Pax, a vital Chinese herbal plant. Here, we deployed PacBio single-molecule real-time long-read sequencing technology to generate a near-complete genome assembly for the A. versabilis KC1 strain and obtained a total of 9.80 Gb raw reads. These reads were processed into a 41.05 Mb genome assembly containing 95 contigs with N50 of 1.70 Mb and a maximum length of 3.93 Mb. A total of 10,457 gene models, of which 1,004 encode putatively secreted proteins, were identified in the genome. This high-quality genome assembly and gene annotation resource will facilitate the institution of functional genetic studies aimed at providing a better insight into the infection mechanisms of A. versabilis to support the development of effective control strategies for leaf spot disease of P. heterophylla.
Keyphrases
  • single molecule
  • genome wide
  • copy number
  • dna methylation
  • atomic force microscopy
  • living cells
  • single cell
  • early onset
  • genome wide identification
  • transcription factor
  • drug induced
  • case control