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Enhancement of de novo sequencing, assembly and annotation of the Mongolian gerbil genome with transcriptome sequencing and assembly from several different tissues.

Shifeng ChengYuan FuYaolei ZhangWenfei XianHongli WangBenedikt GrotheXin LiuXun XuAchim KlugElizabeth A McCullagh
Published in: BMC genomics (2019)
We report the first de novo assembly of the Mongolian gerbil genome enhanced by assembly of transcriptome data from several tissues. Sequencing of this genome and transcriptome increases the utility of the gerbil as a model organism, opening the availability of now widely used genetic tools.
Keyphrases
  • single cell
  • genome wide
  • rna seq
  • gene expression
  • dna methylation
  • cerebral ischemia
  • copy number
  • machine learning
  • subarachnoid hemorrhage
  • big data
  • brain injury
  • deep learning