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MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches.

Weizhi SongBernd WemheuerShan ZhangKerrin SteensenTorsten Thomas
Published in: Microbiome (2019)
MetaCHIP provides an opportunity to study HGTs among members of a microbial community and therefore has several applications in the field of microbial ecology and evolution. MetaCHIP is implemented in Python and freely available at https://github.com/songweizhi/MetaCHIP .
Keyphrases
  • microbial community
  • antibiotic resistance genes
  • healthcare
  • mental health
  • genome wide
  • gene expression
  • dna methylation
  • genome wide identification
  • wastewater treatment