Login / Signup

ezBIDS: Guided standardization of neuroimaging data interoperable with major data archives and platforms.

Daniel J LevitasSoichi HayashiSophia Vinci-BooherAnibal HeinsfeldDheeraj BhatiaNicholas LeeAnthony GalassiGuiomar NisoFranco Pestilli
Published in: Scientific data (2024)
Data standardization promotes a common framework through which researchers can utilize others' data and is one of the leading methods neuroimaging researchers use to share and replicate findings. As of today, standardizing datasets requires technical expertise such as coding and knowledge of file formats. We present ezBIDS, a tool for converting neuroimaging data and associated metadata to the Brain Imaging Data Structure (BIDS) standard. ezBIDS contains four major features: (1) No installation or programming requirements. (2) Handling of both imaging and task events data and metadata. (3) Semi-automated inference and guidance for adherence to BIDS. (4) Multiple data management options: download BIDS data to local system, or transfer to OpenNeuro.org or to brainlife.io. In sum, ezBIDS requires neither coding proficiency nor knowledge of BIDS, and is the first BIDS tool to offer guided standardization, support for task events conversion, and interoperability with OpenNeuro.org and brainlife.io.
Keyphrases
  • electronic health record
  • big data
  • high resolution
  • data analysis
  • single cell
  • metabolic syndrome
  • adipose tissue
  • high throughput
  • photodynamic therapy