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Annotated genome sequences of the carnivorous plant Roridula gorgonias and a non-carnivorous relative, Clethra arborea.

Stefanie HartmannMichaela PreickSilke AbeltAndré ScheffelMichael Hofreiter
Published in: BMC research notes (2020)
Our assemblies have total lengths of 284 Mbp (R. gorgonias) and 511 Mbp (C. arborea) and show high BUSCO scores of 84.2% and 89.5%, respectively. We used their predicted genes together with publicly available data from other Ericales' genomes and transcriptomes to assemble a phylogenomic data set for the inference of a species tree. However, groups of orthologs showed a marked absence of species represented by a transcriptome. We discuss possible reasons and caution against combining predicted genes from genome- and transriptome-based assemblies.
Keyphrases
  • genome wide
  • single cell
  • electronic health record
  • dna methylation
  • big data
  • rna seq
  • genetic diversity
  • gene expression
  • bioinformatics analysis
  • genome wide identification
  • data analysis
  • plant growth