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A chromosome-level genome of the striated frogfish (Antennarius striatus).

Ming-Liang HuDeqian FanJiaqi HaoFenghua ZhangWenjie XuChenglong ZhuKun WangXiaojing SongLisen Li
Published in: Scientific data (2024)
The striated frogfish (Antennarius striatus), a member of the sub-order Antennarioidei within the order Lophiiformes, possesses remarkable adaptations. These include the ability to modulate body coloration for camouflage, utilize bioluminescent esca for predation, and employ elbow-like pectoral fins for terrestrial locomotion, making it a valuable model for studying bioluminescence, adaptive camouflage, fin-to-limb transition, and walking-like behaviors. To better study and contribute to the conservation of the striated frogfish, we obtained the micro-CT image of the pectoral fin bones and generated a high-quality, chromosome-level genome assembly using multiple sequencing technologies. The assembly spans 548.56 Mb with a contig N50 of 21.05 Mb, and 99.35% of the genome is anchored on 24 chromosomes, making it the most complete genome available within Lophiiformes. The genome annotation revealed 28.43% repetitive sequences and 23,945 protein-coding genes. This chromosome-level genome provides valuable genetic resources for frogfish conservation and offers insights into the genetic mechanisms underlying its unique phenotypic evolution. Furthermore, it establishes a foundation for future research on limb development and adaptive camouflage in this species.
Keyphrases
  • genome wide
  • copy number
  • dna methylation
  • computed tomography
  • high frequency
  • single cell
  • machine learning
  • deep learning
  • high intensity
  • quantum dots
  • dual energy
  • lower limb