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Increasing the O 2 Resistance of the [FeFe]-Hydrogenase CbA5H through Enhanced Protein Flexibility.

Andreas RutzChandan Kumar DasAndrea FasanoJan JaeneckeShanika YadavUlf-Peter ApfelVera EngelbrechtVincent FourmondChristophe LégerLars V SchäferThomas Happe
Published in: ACS catalysis (2022)
The high turnover rates of [FeFe]-hydrogenases under mild conditions and at low overpotentials provide a natural blueprint for the design of hydrogen catalysts. However, the unique active site (H-cluster) degrades upon contact with oxygen. The [FeFe]-hydrogenase from Clostridium beijerinckii (CbA5H) is characterized by the flexibility of its protein structure, which allows a conserved cysteine to coordinate to the active site under oxidative conditions. Thereby, intrinsic cofactor degradation induced by dioxygen is minimized. However, the protection from O 2 is only partial, and the activity of the enzyme decreases upon each exposure to O 2 . By using site-directed mutagenesis in combination with electrochemistry, ATR-FTIR spectroscopy, and molecular dynamics simulations, we show that the kinetics of the conversion between the oxygen-protected inactive state (cysteine-bound) and the oxygen-sensitive active state can be accelerated by replacing a surface residue that is very distant from the active site. This sole exchange of methionine for a glutamate residue leads to an increased resistance of the hydrogenase to dioxygen. With our study, we aim to understand how local modifications of the protein structure can have a crucial impact on protein dynamics and how they can control the reactivity of inorganic active sites through outer sphere effects.
Keyphrases
  • molecular dynamics simulations
  • amino acid
  • protein protein
  • binding protein
  • lymph node
  • molecular docking
  • single molecule
  • living cells
  • dna damage
  • highly efficient
  • water soluble