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Torsion angles to map and visualize the conformational space of a protein.

Helen Mary Ginn
Published in: Protein science : a publication of the Protein Society (2023)
Present understanding of protein structure dynamics trails behind that of static structures. A torsion-angle based approach, called representation of protein entities (RoPE), derives an interpretable conformational space which correlates with data collection temperature, resolution and reaction coordinate. For more complex systems, atomic coordinates fail to separate functional conformational states, which are still preserved by torsion angle-derived space. This indicates that torsion angles are often a more sensitive and biologically relevant descriptor for protein conformational dynamics than atomic coordinates. This article is protected by copyright. All rights reserved.
Keyphrases
  • single molecule
  • molecular dynamics
  • molecular dynamics simulations
  • protein protein
  • high resolution
  • binding protein
  • small molecule
  • machine learning
  • electronic health record
  • neural network