MRI-Based Radiomics Combined with Deep Learning for Distinguishing IDH-Mutant WHO Grade 4 Astrocytomas from IDH-Wild-Type Glioblastomas.
Seyyed Ali HosseiniElahe HosseiniGhasem HajianfarIsaac ShiriStijn ServaesPedro Rosa-NetoLaiz GodoyMac Lean P NasrallahDonald M O'RourkeSuyash MohanSeung-Cheol LeePublished in: Cancers (2023)
This study aimed to investigate the potential of quantitative radiomic data extracted from conventional MR images in discriminating IDH-mutant grade 4 astrocytomas from IDH-wild-type glioblastomas (GBMs). A cohort of 57 treatment-naïve patients with IDH-mutant grade 4 astrocytomas ( n = 23) and IDH-wild-type GBMs ( n = 34) underwent anatomical imaging on a 3T MR system with standard parameters. Post-contrast T1-weighted and T2-FLAIR images were co-registered. A semi-automatic segmentation approach was used to generate regions of interest (ROIs) from different tissue components of neoplasms. A total of 1050 radiomic features were extracted from each image. The data were split randomly into training and testing sets. A deep learning-based data augmentation method (CTGAN) was implemented to synthesize 200 datasets from the training sets. A total of 18 classifiers were used to distinguish two genotypes of grade 4 astrocytomas. From generated data using 80% training set, the best discriminatory power was obtained from core tumor regions overlaid on post-contrast T1 using the K-best feature selection algorithm and a Gaussian naïve Bayes classifier (AUC = 0.93, accuracy = 0.92, sensitivity = 1, specificity = 0.86, PR_AUC = 0.92). Similarly, high diagnostic performances were obtained from original and generated data using 50% and 30% training sets. Our findings suggest that conventional MR imaging-based radiomic features combined with machine/deep learning methods may be valuable in discriminating IDH-mutant grade 4 astrocytomas from IDH-wild-type GBMs.
Keyphrases
- wild type
- deep learning
- contrast enhanced
- convolutional neural network
- artificial intelligence
- big data
- electronic health record
- machine learning
- magnetic resonance
- magnetic resonance imaging
- computed tomography
- virtual reality
- data analysis
- lymph node metastasis
- high grade
- rna seq
- optical coherence tomography
- replacement therapy