Molecular and functional profiling identifies therapeutically targetable vulnerabilities in plasmablastic lymphoma.
Fabian FrontzekAnnette M StaigerMyroslav ZapukhlyakWendan XuIrina BonzheimVanessa BorgmannPhilip SanderMaria Joao BaptistaJan-Niklas HemingPhilipp BerningRamona WullenkordTabea ErdmannMathias LutzPia VerattiSophia EhrenfeldKirsty WienandHeike HornJohn R GoodladMatthew R WilsonIoannis AnagnostopoulosMario LampingEva González-BarcaFina ClimentAntonio Salar-SilvestreJosep CastellvíPau AbrisquetaJavier MenarguezTeresa AldamizJulia RichterWolfram KlapperAlexandar TzankovStefan DirnhoferAndreas RosenwaldJosé Luis MateGustavo TapiaPeter LenzChristoph Cornelius MiethingWolfgang HartmannBjörn ChapuyFalko FendGerman OttJose-Tomás NavarroMichael GrauGeorg LenzPublished in: Nature communications (2021)
Plasmablastic lymphoma (PBL) represents a rare and aggressive lymphoma subtype frequently associated with immunosuppression. Clinically, patients with PBL are characterized by poor outcome. The current understanding of the molecular pathogenesis is limited. A hallmark of PBL represents its plasmacytic differentiation with loss of B-cell markers and, in 60% of cases, its association with Epstein-Barr virus (EBV). Roughly 50% of PBLs harbor a MYC translocation. Here, we provide a comprehensive integrated genomic analysis using whole exome sequencing (WES) and genome-wide copy number determination in a large cohort of 96 primary PBL samples. We identify alterations activating the RAS-RAF, JAK-STAT, and NOTCH pathways as well as frequent high-level amplifications in MCL1 and IRF4. The functional impact of these alterations is assessed using an unbiased shRNA screen in a PBL model. These analyses identify the IRF4 and JAK-STAT pathways as promising molecular targets to improve outcome of PBL patients.
Keyphrases
- epstein barr virus
- diffuse large b cell lymphoma
- copy number
- genome wide
- mitochondrial dna
- dna methylation
- end stage renal disease
- newly diagnosed
- ejection fraction
- chronic kidney disease
- dendritic cells
- single molecule
- prognostic factors
- high throughput
- gene expression
- single cell
- cell proliferation
- immune response
- patient reported outcomes
- molecularly imprinted
- solid phase extraction