Extracting multiple surfaces from 3D microscopy images in complex biological tissues with the Zellige software tool.

Céline TrébeauJacques Boutet de MonvelGizem AltayJean-Yves TinevezRaphaël Etournay

Published in: BMC biology (2022)

As a proof of principle of the versatility of Zellige, we demonstrate its performance and robustness on synthetic images and on four different types of biological samples, covering a wide range of biological contexts.

Keyphrases

optical coherence tomography
deep learning
convolutional neural network
gene expression
high resolution
single molecule
high throughput
machine learning
staphylococcus aureus