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Structural basis of early translocation events on the ribosome.

Emily J RundletMikael HolmMagdalena SchacherlS Kundhavai NatchiarRoger B AltmanChristian M T SpahnAlexander G MyasnikovScott C Blanchard
Published in: Nature (2021)
Peptide-chain elongation during protein synthesis entails sequential aminoacyl-tRNA selection and translocation reactions that proceed rapidly (2-20 per second) and with a low error rate (around 10-3 to 10-5 at each step) over thousands of cycles1. The cadence and fidelity of ribosome transit through mRNA templates in discrete codon increments is a paradigm for movement in biological systems that must hold for diverse mRNA and tRNA substrates across domains of life. Here we use single-molecule fluorescence methods to guide the capture of structures of early translocation events on the bacterial ribosome. Our findings reveal that the bacterial GTPase elongation factor G specifically engages spontaneously achieved ribosome conformations while in an active, GTP-bound conformation to unlock and initiate peptidyl-tRNA translocation. These findings suggest that processes intrinsic to the pre-translocation ribosome complex can regulate the rate of protein synthesis, and that energy expenditure is used later in the translocation mechanism than previously proposed.
Keyphrases
  • single molecule
  • structural basis
  • high resolution
  • mass spectrometry
  • living cells
  • genome wide
  • binding protein
  • molecular dynamics simulations