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A benchmarked comparison of software packages for time-lapse image processing of monolayer bacterial population dynamics.

Atiyeh AhmadiMatthew CourtneyCarolyn RenBrian P Ingalls
Published in: Microbiology spectrum (2024)
Time-lapse microscopy provides a detailed window into the world of bacterial behavior. However, the vast amount of data produced by these techniques is difficult to analyze manually. We have analyzed four software tools designed to process such data and compared their performance, using populations of commonly studied bacterial species as our test subjects. Our findings offer a roadmap to scientists, helping them choose the right tool for their research. This comparison bridges a gap between microbiology and computational analysis, streamlining research efforts.
Keyphrases
  • electronic health record
  • data analysis
  • big data
  • high resolution
  • deep learning
  • single molecule
  • high throughput
  • optical coherence tomography