HaVec: An Efficient de Bruijn Graph Construction Algorithm for Genome Assembly.

Md Mahfuzer RahmanRatul SharkerSajib BiswasM Sohel Rahman

Published in: International journal of genomics (2017)

In general, the graph construction procedure takes the major share of the time involved in an assembly process. HaVec can be seen as a significant advancement in this aspect. We anticipate that HaVec will be extremely useful in the de Bruijn graph-based genome assembly.

Keyphrases

neural network
convolutional neural network
deep learning
genome wide
machine learning
minimally invasive
dna methylation