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Chromosome-level genome assembly of an oligophagous leaf beetle Ophraella communa (Coleoptera: Chrysomelidae).

Yi-Ting WangYan ZhangChao MaWei-Hua MaLi-Jun CaoJin-Cui ChenWei SongJing-Fang YangXu-Yuan GaoHong-Song ChenZhen-Ya TianNicolas DesneuxShu-Jun WeiZhong-Shi Zhou
Published in: Scientific data (2024)
The leaf beetle Ophraella communa LeSage (Coleoptera: Chrysomelidae) is an effective biological control agent of the common ragweed. Here, we assembled a chromosome-level genome of the O. communa by combining Illumina, Nanopore, and Hi-C sequencing technologies. The genome size of the final genome assembly is 733.1 Mb, encompassing 17 chromosomes, with an improved contig N50 of 7.05 Mb compared to the original version. Genome annotation reveals 25,873 protein-coding genes, with functional annotations available for 22,084 genes (85.35%). Non-coding sequence annotation identified 204 rRNAs, 626 tRNAs, and 1791 small RNAs. Repetitive elements occupy 414.41 Mb, constituting 57.76% of the genome. This high-quality genome is fundamental for advancing biological control strategies employing O. communa.
Keyphrases
  • genome wide
  • copy number
  • gene expression
  • single cell
  • rna seq
  • transcription factor
  • protein protein
  • genome wide identification