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Establishing the Validity of Compressed Sensing Diffusion Spectrum Imaging.

Hamsanandini RadhakrishnanChenying ZhaoValerie J SydnorErica B BallerPhilip A CookDamien FairBarry GiesbrechtBart LarsenKristin MurthaDavid R RoalfSage Rush-GoebelRussell ShinoharaHaochang ShouM Dylan TisdallJean VettelScott GraftonMatthew C CieslakTheodore Satterthwaite
Published in: bioRxiv : the preprint server for biology (2023)
Diffusion Spectrum Imaging (DSI) using dense Cartesian sampling of q -space has been shown to provide important advantages for modeling complex white matter architecture. However, its adoption has been limited by the lengthy acquisition time required. Sparser sampling of q -space combined with compressed sensing (CS) reconstruction techniques has been proposed as a way to reduce the scan time of DSI acquisitions. However prior studies have mainly evaluated CS-DSI in post-mortem or non-human data. At present, the capacity for CS-DSI to provide accurate and reliable measures of white matter anatomy and microstructure in the living human brain remains unclear. We evaluated the accuracy and inter-scan reliability of 6 different CS-DSI schemes that provided up to 80% reductions in scan time compared to a full DSI scheme. We capitalized on a dataset of twenty-six participants who were scanned over eight independent sessions using a full DSI scheme. From this full DSI scheme, we subsampled images to create a range of CS-DSI images. This allowed us to compare the accuracy and inter-scan reliability of derived measures of white matter structure (bundle segmentation, voxel-wise scalar maps) produced by the CS-DSI and the full DSI schemes. We found that CS-DSI estimates of both bundle segmentations and voxel-wise scalars were nearly as accurate and reliable as those generated by the full DSI scheme. Moreover, we found that the accuracy and reliability of CS-DSI was higher in white matter bundles that were more reliably segmented by the full DSI scheme. As a final step, we replicated the accuracy of CS-DSI in a prospectively acquired dataset (n=20, scanned once). Together, these results illustrate the utility of CS-DSI for reliably delineating in vivo white matter architecture in a fraction of the scan time, underscoring its promise for both clinical and research applications.
Keyphrases
  • white matter
  • computed tomography
  • multiple sclerosis
  • deep learning
  • magnetic resonance imaging
  • convolutional neural network
  • magnetic resonance
  • electronic health record
  • dual energy