Transcriptome Profile of Fusarium graminearum Treated by Putrescine.
Lina ZhangXishi ZhouPengfeng LiYiwei WangQianyong HuYuping ShangYunshen ChenXiying ZhuHongjie FengCui-Jun ZhangPublished in: Journal of fungi (Basel, Switzerland) (2022)
Fusarium graminearum ( F. graminearum ) is the main pathogen of Fusarium head blight (FHB) in wheat, barley, and corn. Deoxynivalenol (DON), produced by F. graminearum , is the most prevalent toxin associated with FHB. The wheat defense compound putrescine can promote DON production during F. graminearum infection. However, the underlying mechanisms of putrescine-induced DON synthesis are not well-studied. To investigate the effect of putrescine on the global transcriptional regulation of F. graminearum , we treated F. graminearum with putrescine and performed RNA deep sequencing. We found that putrescine can largely affect the transcriptome of F. graminearum . Gene ontology (GO) and KEGG enrichment analysis revealed that having a large amount of DEGs was associated with ribosome biogenesis, carboxylic acid metabolism, glycolysis/gluconeogenesis, and amino acid metabolism pathways. Co-expression analysis showed that 327 genes had similar expression patterns to FgTRI genes and were assigned to the same module. In addition, three transcription factor genes were identified as hub genes in this module, indicating that they may play important roles in DON synthesis. These results provide important clues for further analysis of the molecular mechanisms of putrescine-induced DON synthesis and will facilitate the study of the pathogenic mechanisms of FHB.
Keyphrases
- genome wide
- genome wide identification
- transcription factor
- single cell
- bioinformatics analysis
- dna methylation
- gene expression
- amino acid
- rna seq
- high glucose
- diabetic rats
- escherichia coli
- copy number
- endothelial cells
- oxidative stress
- candida albicans
- dna binding
- newly diagnosed
- optical coherence tomography
- optic nerve
- stress induced