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Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim.

Chen YangTheodora LoKa Ming NipSaber HafezqoraniRene L WarrenInanc Birol
Published in: GigaScience (2023)
The Meta-NanoSim characterization module investigates read features, including chimeric information and abundance levels, while the simulation module simulates large and complex multisample microbial communities with different abundance profiles. All trained models and the software are freely accessible at GitHub: https://github.com/bcgsc/NanoSim.
Keyphrases
  • antibiotic resistance genes
  • single molecule
  • cell therapy
  • virtual reality
  • microbial community
  • electronic health record
  • data analysis
  • resistance training
  • machine learning