cljam: a library for handling DNA sequence alignment/map (SAM) with parallel processing.

Toshiki TakeuchiAtsuo YamadaTakashi AokiKunihiro Nishimura

Published in: Source code for biology and medicine (2016)

Cljam can process and analyze SAM/BAM files in parallel and at high speed. The execution time with cljam is almost the same as with SAMtools. The cljam code is written in Clojure and has fewer lines than other similar tools.

Keyphrases

high speed
atomic force microscopy
circulating tumor
high resolution
single molecule
cell free
mass spectrometry
high density