TagDigger: user-friendly extraction of read counts from GBS and RAD-seq data.

Lindsay V ClarkErik J Sacks

Published in: Source code for biology and medicine (2016)

TagDigger is open-source and freely available software written in Python 3. It uses a scalable, rapid search algorithm that can process over 100 million FASTQ reads per hour. TagDigger will run on a laptop with any operating system, does not consume hard drive space with intermediate files, and does not require programming skill to use.

Keyphrases

machine learning
dna damage
data analysis
electronic health record
blood pressure
dna repair
genome wide
rna seq
deep learning
single cell
big data
single molecule
peripheral blood
loop mediated isothermal amplification
low cost
gene expression
oxidative stress
artificial intelligence
quantum dots