Label propagation-based semi-supervised feature selection on decoding clinical phenotypes with RNA-seq data.
Xue JiangMiao ChenWeichen SongGuan Ning LinPublished in: BMC medical genomics (2021)
In this study, we designed a label propagation-based semi-supervised feature selection model to precisely selected key genes of different disease phenotypes. We conducted experiments using the model with Huntington's disease mice gene expression data to decode the mechanisms of it. We found many cell types, including astrocyte, microglia, and GABAergic neuron, could be involved in the pathological process.
Keyphrases
- rna seq
- machine learning
- single cell
- gene expression
- big data
- electronic health record
- deep learning
- dna methylation
- artificial intelligence
- genome wide
- inflammatory response
- cell therapy
- stem cells
- spinal cord injury
- spinal cord
- mesenchymal stem cells
- neural network
- insulin resistance
- skeletal muscle
- bioinformatics analysis
- bone marrow