T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes.
Michail TsimpidisGeorgios BachoumisKalliopi MimouliZaharoula KyriakopoulouDavid L RobertsonPanayotis MarkoulatosGrigorios D AmoutziasPublished in: BMC bioinformatics (2017)
T-RECs is very effective, as demonstrated by an analysis of 555 Norovirus complete genomes and 2500 sequence fragments, where a recombination hotspot was identified at the ORF1-ORF2 junction.