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PyMICE: APython library for analysis of IntelliCage data.

Jakub M DzikAlicja PuścianZofia MijakowskaKasia RadwanskaSzymon Łęski
Published in: Behavior research methods (2019)
IntelliCage is an automated system for recording the behavior of a group of mice housed together. It produces rich, detailed behavioral data calling for new methods and software for their analysis. Here we present PyMICE, a free and open-source library for analysis of IntelliCage data in the Python programming language. We describe the design and demonstrate the use of the library through a series of examples. PyMICE provides easy and intuitive access to IntelliCage data, and thus facilitates the possibility of using numerous other Python scientific libraries to form a complete data analysis workflow.
Keyphrases
  • data analysis
  • electronic health record
  • big data
  • autism spectrum disorder
  • type diabetes
  • skeletal muscle
  • artificial intelligence
  • deep learning