Comparative analysis of bacterial diversity in accumulated snow and exposed sediments across Antarctic Islands.
Namrata JiyaRochita GhoshPrafulla ShedeAvinash SharmaPublished in: Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] (2024)
The Antarctic continent hosts exceptional niches, making it an ideal environment for studying polyextremophilic microorganisms. These organisms are uniquely shaped by the geographic niches and variations in soil types. Here we present, a culture-independent approach using DNA metabarcoding to assess the bacterial communities associated with accumulated snow and exposed sediments across different Antarctic islands situated in the Larsemann Hills, Antarctica. The exposed sediments (ES) were found to be more diverse than the accumulated snow (AS) sediments as represented by the alpha diversity metrics. Out of the total 303 amplicon sequence variants (ASVs) found at the genus level, 93 were unique to accumulated snow sediments and 97 were unique to exposed sediments. The bacterial community composition in accumulated snow was dominated by the phylum Actinobacteriota (24.7%). However, Pseudonocardia (11.9%), Crossiella (11%), and Rhodanobacter (9.1%) were the predominant genera. In contrast, in the exposed sediments, Bacteroidota (24.6%) was the most prevalent phylum, with Crossiella (17.1%), Rhodanobacter (11.1%), and Blastocatella (10%) as the most abundant genera. Metagenomic imputations revealed the abundance of gene families responsible for carbon metabolism, coping with environmental stresses through DNA repair mechanisms, and carbon fixation.
Keyphrases
- heavy metals
- polycyclic aromatic hydrocarbons
- dna repair
- organic matter
- risk assessment
- copy number
- magnetic resonance
- dna damage
- depressive symptoms
- magnetic resonance imaging
- gene expression
- genome wide
- dna methylation
- microbial community
- dna damage response
- single cell
- multidrug resistant
- antibiotic resistance genes
- transcription factor
- circulating tumor