Unexpected Role of Achiral Glycine in Determining the Suprastructural Handedness of Peptide Nanofibrils.
Muhan WangYurong ZhaoLimin ZhangJing DengKai QiPeng ZhouXiaoyue MaDong WangZhen LiJiqian WangJun YangJian Ren LuMuHan WangHai XuPublished in: ACS nano (2021)
Helical supramolecular architectures play important structural and functional roles in biological systems. Although their occurrence is widely perceived to correlate to fundamental chiral units including l-amino acids and d-sugars, the detailed relationship between molecular and supramolecular handedness is still unclear. At the same time, although achiral units are practically always in close proximity to chiral ones by covalent linkage along a polymeric chain, their effect on supramolecular handedness has received relatively less attention. Here, we designed a set of short amphiphilic peptides, in which an achiral glycine residue was incorporated at the interface between the hydrophobic and hydrophilic segments. We observed that glycine incorporation caused dramatic variations in suprastructural handedness in self-assembled peptide nanofibrils, and the effect of the hydrophilic charged residue at the C-terminus on supramolecular handedness was demolished, leading to chiral truncation. Furthermore, molecular dynamics simulations and quantum chemistry calculations revealed that the unanticipated role of the glycine residue in regulating supramolecular handedness originated from its effect on the conformational preference of single β-strands. Importantly, reduced density gradient analyses on single β-strands indicated that, due to the lack of a side chain in glycine, intricate noncovalent interactions were produced among the neighboring amino acid side chains of the incorporated glycine and its local backbone, resulting in diverse β-strand conformations.
Keyphrases
- amino acid
- molecular dynamics simulations
- energy transfer
- water soluble
- molecular dynamics
- ionic liquid
- liquid chromatography
- molecular docking
- capillary electrophoresis
- physical activity
- single molecule
- drug delivery
- working memory
- mental health
- gene expression
- hepatitis c virus
- density functional theory
- mass spectrometry
- hiv infected
- monte carlo
- solid phase extraction
- simultaneous determination