Cellsnake: a user-friendly tool for single-cell RNA sequencing analysis.

Sinan Uğur Umu Karoline Rapp Vander-Elst Victoria T Karlsen Manto Chouliara Espen Sønderaal Bækkevold Frode Lars Jahnsen Diana Domanska

Published in: GigaScience (2023)

As an open-source tool, cellsnake is accessible through Bioconda, PyPi, Docker, and GitHub, making it a cost-effective and user-friendly option for researchers. By using cellsnake, researchers can streamline the analysis of scRNA-seq data and gain insights into the complex biology of single cells.

Keyphrases

single cell
rna seq
induced apoptosis
high throughput
cell cycle arrest
low cost
big data
electronic health record
genome wide
oxidative stress
gene expression
cell proliferation
deep learning