Fine-grained parallelization of fitness functions in bioinformatics optimization problems: gene selection for cancer classification and biclustering of gene expression data.
Juan A Gómez-PulidoJose L Cerrada-BarriosSebastian Trinidad-AmadoJose M Lanza-GutierrezRamon A Fernandez-DiazBroderick CrawfordRicardo SotoPublished in: BMC bioinformatics (2016)
The results show better performances using reconfigurable hardware technology instead of usual microprocessors, in computing time and power consumption terms, not only because of the parallelization of the arithmetic operations, but also thanks to the concurrent fitness evaluation for several individuals of the population in the metaheuristic. This is a good basis for building accelerated and low-energy solutions for intensive computing scenarios.
Keyphrases
- gene expression
- body composition
- physical activity
- papillary thyroid
- mental health
- dna methylation
- machine learning
- climate change
- deep learning
- genome wide
- molecular dynamics
- electronic health record
- air pollution
- squamous cell
- copy number
- locally advanced
- big data
- lymph node metastasis
- squamous cell carcinoma
- genome wide identification
- artificial intelligence
- childhood cancer