TP53 mutation-related senescence is an indicator of hepatocellular carcinoma patient outcomes from multiomics profiles.
Yu-Yan ChenZheng-Yi ZhuTao MaLu ZhangJing ChenJia-Wei JiangCui-Hua LuYi-Tao DingWen-Xian GuanNan YiHao-Zhen RenPublished in: Smart medicine (2023)
TP53 mutation frequently occurs in hepatocellular carcinoma (HCC). Senescence also plays a vital role in the ongoing process of HCC. P53 is believed to regulate the advancement of senescence in HCC. However, the exact mechanism of TP53 mutation-related senescence remains unclear. In this study, we found the TP53 mutation was positively correlated with senescence in HCC, and the differential expressed genes were primarily located in macrophages. Our results proved that the risk score could have an independent and vital role in predicting the prognosis of HCC patients. In addition, HCC patients with a high risk score may most probably benefit from immune checkpoint block therapy. We also found the risk score is elevated in chemotherapy-treated HCC samples, with a high level of senescence-associated secretory phenotype. Finally, we validated the risk-score genes in the protein level and noticed the risk score is positively related with M2 polarization. Of note, we considered that the risk score under the TP53 mutation and senescence is a promising biomarker with the potential to aid in predicting prognosis, defining tumor environment characteristics, and assessing the benefits of immunotherapy for HCC patients.
Keyphrases
- dna damage
- endothelial cells
- end stage renal disease
- stress induced
- newly diagnosed
- ejection fraction
- chronic kidney disease
- peritoneal dialysis
- genome wide
- patient reported outcomes
- squamous cell carcinoma
- oxidative stress
- transcription factor
- locally advanced
- climate change
- mesenchymal stem cells
- patient reported
- molecular dynamics
- drug induced
- amino acid
- human health
- bioinformatics analysis