Biomimetic Virulomics for Capture and Identification of Cell-Type Specific Effector Proteins.
John D LapekRonnie H FangXiaoli WeiPengyang LiBo WangLiangfang ZhangDavid J GonzalezPublished in: ACS nano (2017)
An unmet challenge in the study of disease is to accurately streamline the identification of important virulence factors. Traditional, genetically driven approaches miss biologically relevant markers due to discordance between the genome and proteome. Here, we developed a nanotechnology-enabled affinity enrichment strategy coupled with multiplexed quantitative proteomics, namely Biomimetic Virulomics, for successful identification of cell-type specific effector proteins of both prokaryotic and eukaryotic pathogens. We highlight the power of Biomimetic Virulomics by capturing known virulence factors in a high-throughput, cell-type guided fashion. Additionally, a comprehensive characterization of the membrane protein component of biomimetics utilized in this strategy is provided. Interfacing cell-derived nanomaterials with multiplexed quantitative proteomics allow for a specific targeting strategy of virulence factors that can be utilized for drug discovery against prominent human diseases.
Keyphrases
- antimicrobial resistance
- escherichia coli
- pseudomonas aeruginosa
- drug discovery
- staphylococcus aureus
- high throughput
- biofilm formation
- single cell
- mass spectrometry
- endothelial cells
- bioinformatics analysis
- dendritic cells
- regulatory t cells
- cystic fibrosis
- gene expression
- genome wide
- immune response
- type iii
- gram negative
- label free
- tissue engineering
- multidrug resistant