WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates.

Astrid P HeikemaRick JansenSaskia D HiltemannJohn P HaysAndrew P Stubbs

Published in: BMC microbiology (2021)

WeFaceNano is a user-friendly open-source software pipeline suitable for accurate plasmid assembly and the detection of anti-microbial resistance genes in (clinical) samples where multiple plasmids can be present.

Keyphrases

escherichia coli
loop mediated isothermal amplification
crispr cas
real time pcr
label free
genome wide
low cost
microbial community
high resolution
klebsiella pneumoniae
multidrug resistant
data analysis
amino acid
sensitive detection