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Evaluation of GeneXpert PA assay compared to genomic and (semi-)quantitative culture methods for direct detection of Pseudomonas aeruginosa in endotracheal aspirates.

Thomas Ewout van der SchalkJasmine CoppensLeen TimbermontAgata Turlej-RogackaLiesbet Van HeirstraetenMatilda BerkellLi YuChristine LammensBasil Britto XavierVeerle MatheeussenMargareta IevenMichael McCarthyPhilippe G JorensAlexey RuzinMark T EsserSamir Kumar-SinghHerman GoossensSurbhi Malhotra-Kumar
Published in: Antimicrobial resistance and infection control (2021)
This first evaluation of the GeneXpert PA assay with ETA samples found it to be as sensitive and specific as the routine, hospital-based semi-quantitative culture method. Additionally, the GeneXpert PA assay is easy to perform (hands-on time ≈ 5 min) and rapid (≈ 55 min assay time). The combination of the high sensitivity and high specificity together with the rapid acquisition of results makes the GeneXpert PA assay a highly recommended screening technique. Where this equipment is not available, semi-quantitative culture remains the most sensitive of the culture methods evaluated here for P. aeruginosa detection in ETA samples.
Keyphrases
  • high throughput
  • loop mediated isothermal amplification
  • pseudomonas aeruginosa
  • high resolution
  • cystic fibrosis
  • dna methylation
  • gene expression
  • drug resistant
  • genome wide
  • acinetobacter baumannii