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The role of microenvironments on computed vibrationally-resolved emission spectra: The case of oxazines.

Nghia Nguyen Thi MinhCarolin König
Published in: Journal of computational chemistry (2024)
Oxazine dyes act as reporters of their near environment by the response of their fluorescence spectra. At the same time, their fluorescence spectra exhibit a pronounced vibrational progression. In this work, we computationally investigate the impact of near-environment models consisting of aggregated water as well as betaine molecules on the vibrational profile of fluorescence spectra of different oxazine derivatives. For aggregated betaine and a water molecule located above the plane of the dyes, we observe a distinct modification of the vibrational profile, which is more pronounced than the effect of a continuum description of a solvent environment. Our analysis shows that this effect cannot be explained by a pure change in the electronic structure, but that also vibrational degrees of freedom of the environment can be decisive for the vibrational profile and should, hence, not generally be neglected.
Keyphrases
  • density functional theory
  • energy transfer
  • molecular dynamics
  • molecular dynamics simulations
  • single molecule
  • quantum dots
  • computed tomography
  • diffusion weighted imaging
  • structure activity relationship