Analysis of the complete plastidial genome of the newly highland papaya Vasconcellea carvalhoae (Caricaceae) from Peru.

Daniel Tineo-Flores Danilo E Bustamante Martha S Calderon

Published in: Mitochondrial DNA. Part B, Resources (2022)

Especially in South American Andean communities, Vasconcellea carvalhoae D. Tineo & D.E. Bustamante 2020 is a significant highland papaya with agronomic promise. High-throughput sequencing of the holotype specimen of V. carvalhoae from Peru (KUELAP227) resulted in the assembly of its complete plastid genome (GenBank accession number ON764441). The plastid genome of this highland papaya is 158,723 bp and contains 130 genes. This plastid genome is similar in length, content, and organization to other members of Caricaceae, except for the absence of the pseudogene infA. Phylogenetic analyses of V. carvalhoae support its sistership to V. pubescens .

Keyphrases

genome wide
high throughput sequencing
dna methylation
machine learning
big data
gene expression
transcription factor
bioinformatics analysis