OCTAL: Optimal Completion of gene trees in polynomial time.
Sarah ChristensenErin K MolloyPranjal VachaspatiTandy WarnowPublished in: Algorithms for molecular biology : AMB (2018)
OCTAL is a useful technique for adding missing taxa to incomplete gene trees and provides good accuracy under a wide range of model conditions. However, results show that OCTAL's accuracy can be reduced when incomplete lineage sorting is high, as the reference tree can be far from the true gene tree. Hence, this study suggests that OCTAL would benefit from using other types of reference trees instead of species trees when there are large topological distances between true gene trees and species trees.