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Phytophthora capsici genome assembly for two isolates using long-read Oxford Nanopore Technology sequencing.

Emmanuel SzadkowskiJacques LagnelNasradin TouhamiAmalia SayehCéline RoquesOlivier BouchezVeronique Lefebvre
Published in: Microbiology resource announcements (2023)
The oomycete Phytophthora capsici is a common pathogen of the Solanaceae and Cucurbitaceae families. An improved assembly for the reference isolate LT1534 was constructed using Oxford Nanopore Technologies and Illumina data. Additionally, an unpolished assembly was produced for the European isolate Pc285 collected on chili pepper using Oxford Nanopore reads.
Keyphrases
  • single molecule
  • solid state
  • single cell
  • electronic health record
  • candida albicans
  • machine learning
  • genome wide
  • dna methylation
  • genetic diversity