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A design logic for sequential segmentation across organisms.

M Fethullah SimsekErtuğrul M Özbudak
Published in: The FEBS journal (2023)
Multitudes of organisms display metameric compartmentalization of their body plan. Segmentation of these compartments happens sequentially in diverse phyla. In several sequentially segmenting species, periodically active molecular clocks and signaling gradients have been found. The clocks are proposed to control the timing of segmentation while the gradients are proposed to instruct the positions of segment boundaries. However, the identity of the clock and gradient molecules differ across species. Furthermore, sequential segmentation of a basal chordate, Amphioxus, continues at late stages when the small tail bud cell population cannot establish long-range signaling gradients. Thus, it remains to be explained how a conserved morphological trait (i.e., sequential segmentation) is achieved by using different molecules or molecules with different spatial profiles. Here, we first focus on sequential segmentation of somites in vertebrate embryos and then draw parallels with other species. Thereafter, we propose a candidate design principle that has the potential to answer this puzzling question.
Keyphrases
  • deep learning
  • convolutional neural network
  • machine learning
  • single cell
  • stem cells
  • gene expression
  • transcription factor
  • risk assessment
  • genome wide