Model discovery approach enables noninvasive measurement of intra-tumoral fluid transport in dynamic MRI.
Ryan T WoodallCora C EsparzaMargarita GutovaMaosen WangJessica J CunninghamAlexander Byers BrummerCaleb A StineChristine C BrownJennifer M MunsonRussell C RocknePublished in: APL bioengineering (2024)
Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is a routine method to noninvasively quantify perfusion dynamics in tissues. The standard practice for analyzing DCE-MRI data is to fit an ordinary differential equation to each voxel. Recent advances in data science provide an opportunity to move beyond existing methods to obtain more accurate measurements of fluid properties. Here, we developed a localized convolutional function regression that enables simultaneous measurement of interstitial fluid velocity, diffusion, and perfusion in 3D. We validated the method computationally and experimentally, demonstrating accurate measurement of fluid dynamics in situ and in vivo . Applying the method to human MRIs, we observed tissue-specific differences in fluid dynamics, with an increased fluid velocity in breast cancer as compared to brain cancer. Overall, our method represents an improved strategy for studying interstitial flows and interstitial transport in tumors and patients. We expect that our method will contribute to the better understanding of cancer progression and therapeutic response.
Keyphrases
- contrast enhanced
- magnetic resonance imaging
- computed tomography
- magnetic resonance
- diffusion weighted imaging
- papillary thyroid
- end stage renal disease
- chronic kidney disease
- healthcare
- primary care
- newly diagnosed
- endothelial cells
- high resolution
- public health
- electronic health record
- gene expression
- small molecule
- big data
- machine learning
- high throughput
- white matter
- squamous cell
- clinical practice
- young adults
- mass spectrometry
- multiple sclerosis
- deep learning
- resting state
- prognostic factors
- induced pluripotent stem cells
- breast cancer risk